New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1972751	0 (0.000)	7 (0.580)	6/168	0.5	100%	intergenic (‑297/‑483)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC
	?	NZ_CP009273	= 2283592	NA (NA)					intergenic (‑68/‑387)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP

TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACA  >  NZ_CP009273/1972666‑1972838                                                                                      |                                                                                        gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATa                                                                                     <  1:296934‑M2/9‑1 (MQ=255)  ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATaa                                                                                    <  2:231377‑M2/10‑1 (MQ=255)  cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                    >  2:332220‑M1/1‑85 (MQ=255)                 aTACAACGGAGGGGGCCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                     >  1:242909‑M1/1‑70 (MQ=255)                        ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    <  1:266436‑M1/84‑22 (MQ=255)                        ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    >  2:266436‑M1/1‑63 (MQ=255)                          aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttttgtttt                                                            <  1:262660‑M2/34‑1 (MQ=255)                           agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttttgttttg                                                           <  1:111992‑M2/35‑1 (MQ=255)                             ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatc                                                         <  1:56684‑M1/90‑33 (MQ=255)                              gggCTGCGATTTTCAATAATCCGTGATGCAGATCACACAAAACACTCAATTACGTAAggaacgtgcgaacaagtccctgggatgagatca                                                        >  1:234603‑M1/1‑57 (MQ=255)                                       actgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCaa                                               <  2:7390‑M2/47‑1 (MQ=255)                                                     gaagaatttccccgcttattcgcaccttcCTTAACATaaa                                                                                   >  1:162138‑M2/30‑40 (MQ=255)                                                     gaagaatttccccgcttattcgcaccttcCTTAACATaaa                                                                                   <  2:162138‑M2/11‑1 (MQ=255)                                                                           caccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaa           <  1:94088‑M2/83‑1 (MQ=255)                                                                                    tAAggaaggtgcgaacaagtccctgatatgaggtcatgtttgtcatctggagccatagaacagggttaatcatgagtcatcaacttacct  >  2:330017‑M1/1‑3 (MQ=255)                                                                                      |                                                                                        TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACA  >  NZ_CP009273/1972666‑1972838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.