Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2354346	2354355	10	2 [0]	[1] 2	rhmD	L‑rhamnonate dehydratase

GCCATCATGTGGCCCCCAGTGCGTCGGCATTTTGCCA  >  NZ_CP009273/2354309‑2354345                                     | gCCATCATGTGGCCCCCAGTGCGTCGGCATTTTGCCa  >  1:118731/1‑37 (MQ=255) gCCATCATGTGGCCCCCAGTGCGTCGGCATTTTGCCa  <  2:118731/37‑1 (MQ=255)                                     | GCCATCATGTGGCCCCCAGTGCGTCGGCATTTTGCCA  >  NZ_CP009273/2354309‑2354345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑