Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2456516	2456520	5	2 [0]	[0] 3	BW25113_RS12235	hypothetical protein

AGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCTTTTTAATGGTAAG  >  NZ_CP009273/2456521‑2456610 |                                                                                          aGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGAtt                                    <  1:6380/56‑1 (MQ=255) aGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGAtt                                    >  2:6380/1‑56 (MQ=255) aGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCTTTTTAATGGTaag  >  2:35238/1‑90 (MQ=255) |                                                                                          AGCGCAGCTTACCCAGAATCCATCAATGAAAATAACAATGATGAAGTTAATGGATTAGTACAAGAGTTCAAAAACCTTTTTAATGGTAAG  >  NZ_CP009273/2456521‑2456610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑