Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NZ_CP0092733,806,1520CA55.6% ‑0.8 / 10.5 9T21N (ACC→AAC) coaBCbifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC
Reads supporting (aligned to +/- strand):  ref base C (2/2);  new base A (5/0);  total (7/2)
Fisher's exact test for biased strand distribution p-value = 1.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.17e-02
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

TGGTGTCACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTGCTGCCTATAAAACCCCTGAACTGGTGCGTCGTTTGCGCGATCGCGGGGCCGACGTCCGCGTAGCCATGACCGAAGCGGCAAAAGCCTTTATCAC  >  NZ_CP009273/3806064‑3806233
                                                                                        |                                                                                 
tGGTGTCACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTGCTGCCTATAAAAcc                                                                                  <  2:250328/90‑1 (MQ=255)
  gtgtCACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTGCTGCCTATAAAAcccc                                                                                <  1:257461/90‑1 (MQ=255)
      cACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTTCTGCCCATAAAAACCCCGaa                                                                            >  2:58286/1‑90 (MQ=255)
      cACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTGCAGCCTATAAAAACCCTGaa                                                                            >  2:280095/1‑90 (MQ=255)
      cACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGGATTTTTGCCTTTAAAAACCCCGaa                                                                            >  1:116191/1‑90 (MQ=255)
      cACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGGATTTCTGCCTTTAAAAACCCCGaa                                                                            >  1:28965/1‑90 (MQ=255)
               ggAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTGCTGCCTATAAAACCCCTGAACTGGTGcgt                                                                   <  1:212206/90‑1 (MQ=255)
                  aaaaTCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGGATTTCTGCCTATAAAAACCCCGAACTGGGGcggcgt                                                                >  1:60303/1‑90 (MQ=255)
                                                                             tgcCTATAAAACCCCTGAACTGGTGCGTCGTTTGCGCGATCGCGGGGCCGACGTCCGCGt                                   >  1:188508/1‑60 (MQ=255)
                                                                             tgcCTATAAAACCCCTGAACTGGTGCGTCGTTTGCGCGATCGCGGGGCCGACGTCCGCGt                                   <  2:188508/60‑1 (MQ=255)
                                                                                cTATAAAACCCCTGAACTGGTGCGTCGTTTGCGCGATCGCGGGGCCGACGTCCGCGTAGCCATGACCGAAGCGGCAAAAGCCTTTATCAc  >  2:92369/1‑90 (MQ=255)
                                                                                        |                                                                                 
TGGTGTCACCCTACAGGAAAAATCATCATGAGCCTGGCCGGTAAAAAAATCGTTCTCGGCGTTAGCGGCGGTATTGCTGCCTATAAAACCCCTGAACTGGTGCGTCGTTTGCGCGATCGCGGGGCCGACGTCCGCGTAGCCATGACCGAAGCGGCAAAAGCCTTTATCAC  >  NZ_CP009273/3806064‑3806233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑