| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 15 (0.890) | 11/168 | 0.4 | 93.8% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | = 3629487 | 1 (0.060) | intergenic (+234/+81) | yhiM/yhiN | DUF2776 domain‑containing protein/NAD(P)/FAD‑dependent oxidoreductase | |||||
TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282484‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT < NZ_CP009273/3629487‑3629401 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 1:36702/1‑90TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTA > 2:309856/1‑90 TTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAA < 1:380665/90‑1 CGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGA < 1:256448/90‑1 AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGA < 2:65732/90‑1 AAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCT < 1:27465/90‑1 AGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTT < 1:356836/90‑1 AAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAA < 2:104308/90‑1 TTCCCCGCTTATTCGCACCTCCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACT < 1:471114/90‑1 CTTATTCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAG < 2:175373/90‑1 TCGCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCC < 1:149244/90‑1 GCACCTTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAG > 2:171888/1‑90 TTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTT > 1:412810/1‑90 TTCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTT > 1:67498/1‑90 TCCCTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT > 2:28968/1‑90 TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2282484‑2282398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAATGAGCCCGTGAACTGAAACCCTCCATGCTTAATATAAGGTGGATGGAAAGGTGATTGAAAACTCACTCAGTGGCCAGATCTTT < NZ_CP009273/3629487‑3629401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |