New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	3274233 =	6 (0.360)	3 (0.180)	3/166	1.5	23.1%	pseudogene (174/372 nt)	BW25113_RS16250	PTS sugar transporter subunit IIC
	?	NZ_CP009273	= 3274505	14 (0.840)					pseudogene (79/558 nt)	BW25113_RS16255	amidohydrolase family protein

CACCGCCCGGTGGTCCTCGGCCCGTTGGTCGGGCTGGTACTTGGCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCATTACTA  >  NZ_CP009273/3274147‑3274321                                                                                       |                                                                                         cACCGCCCGGTGGTCCTCGGCCCGTTGGTCGGGCTGGTACTTGGCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGgtg                                                                                       <  1:76479/90‑1 (MQ=255)     gCCCGGTGGTCCTCGGCCCGTTGGTCGGGCTGGTACTTGGCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGa                                                                                   >  2:54400/1‑90 (MQ=255)                                               aTCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGGGCACAACCCCCCAACgggg                                         >  1:398282/1‑87 (MQ=255)                                               aTCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGa                                         <  2:458827/90‑1 (MQ=255)                                                                   ttgctataacgggatgacagGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAg                                                      >  1:425406‑M1/21‑57 (MQ=255)                                                                   ttgctataacgggatgacagGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAg                                                      <  2:425406‑M1/37‑1 (MQ=255)                                                                                 ggAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCAt       >  2:452691/1‑90 (MQ=255)                                                                                  gacagGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCAtt      >  2:385405‑M1/6‑90 (MQ=255)                                                                                      tGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCATtacta  >  2:474989/1‑90 (MQ=255)                                                                                       |                                                                                         CACCGCCCGGTGGTCCTCGGCCCGTTGGTCGGGCTGGTACTTGGCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCATTACTA  >  NZ_CP009273/3274147‑3274321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.