| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4532499 = | 1 (0.060) | 11 (0.730) | 10/150 | 0.4 | 76.1% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 6 (0.400) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
AAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGA > NZ_CP009273/4532727‑4532900 | gttagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGt > 2:164791‑M2/87‑90 (MQ=255) tagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGttt < 1:376050‑M2/6‑1 (MQ=255) ctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtt > 2:177727‑M2/79‑90 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGTTGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGaaa > 2:40619/1‑90 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGaaa > 1:244094/1‑90 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGGCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGAAAAc > 2:213524/1‑90 (MQ=255) aatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACtgtg < 1:212353‑M2/28‑1 (MQ=255) ttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGt > 2:90044‑M2/50‑90 (MQ=255) agaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCaa < 2:215750‑M2/44‑1 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 2:322110‑M2/27‑90 (MQ=255) tCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 2:70471/90‑1 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa < 2:244094/90‑1 (MQ=255) atggacagtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCCGCCAAACTCGTTTACAAAACAAAGTGGACAGa > 1:422048‑M2/20‑90 (MQ=255) gtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt < 2:13269‑M2/51‑1 (MQ=255) gtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt > 1:13269‑M2/13‑63 (MQ=255) gtttggccccaaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg > 2:273165‑M2/13‑90 (MQ=255) aaaTGGCCCCAAATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg > 2:146744/1‑90 (MQ=255) aaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc < 1:290619‑M2/76‑1 (MQ=255) aaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAc > 2:290619‑M2/3‑78 (MQ=255) aaATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGa > 2:347953‑M2/3‑90 (MQ=255) | AAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTT‑GGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGA > NZ_CP009273/4532727‑4532900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |