Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1972752	1972756	5	37 [0]	[1] 2	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC

CTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972665‑1972840                                                                                       |                                                                                          cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgga                                                                                        <  2:71288‑M1/90‑4 (MQ=255) cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAgga                                                                                        <  2:367988‑M1/90‑4 (MQ=255)   cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  1:130112‑M1/1‑85 (MQ=255)   cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  1:408138‑M1/1‑85 (MQ=255)   cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  1:196504‑M1/1‑85 (MQ=255)   cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaag                                                                                      >  1:246548‑M1/1‑85 (MQ=255)             cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaa                                                                            >  1:327008‑M1/1‑75 (MQ=255)               cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                          >  1:373398‑M1/1‑73 (MQ=255)                  aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  2:196504‑M1/90‑21 (MQ=255)                       aCGGAGGGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACCCAAAACGCTCAATTACTTAAggaaggtgcgaacaagtccctgata                                                                  <  1:228348‑M1/90‑26 (MQ=255)                           aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:418073‑M1/1‑61 (MQ=255)                           aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:239969‑M1/1‑61 (MQ=255)                           aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                              >  2:196777‑M1/1‑61 (MQ=255)                                 gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatg                                                        >  2:390271‑M1/1‑55 (MQ=255)                                     cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttg                                                    <  1:196777‑M1/90‑40 (MQ=255)                                       aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                  <  1:486140‑M1/90‑42 (MQ=255)                                                   gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  1:239969‑M1/90‑54 (MQ=255)                                                         tGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                <  1:171565‑M1/90‑60 (MQ=255)                                                           cAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                              >  2:5485‑M1/1‑29 (MQ=255)                                                             gATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                            <  1:433392‑M1/90‑64 (MQ=255)                                                                  cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      <  2:76289‑M1/75‑54 (MQ=255)                                                                  cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat                                      >  1:76289‑M1/1‑22 (MQ=255)                                                                     aaaaCACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                    <  2:408138‑M1/90‑72 (MQ=255)                                                                      aaaCACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                   >  1:474290‑M1/1‑18 (MQ=255)                                                                           cTCAATTACTTAAggaaggtgcgaacaagtccctgatttgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat              >  1:3335‑M1/1‑13 (MQ=255)                                                                                    ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         >  2:174234‑M1/1‑4 (MQ=255)                                                                                    ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                         <  1:174234‑M1/54‑51 (MQ=255)                                                                                     tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    >  1:317030‑M1/1‑3 (MQ=255)                                                                                     tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct    <  1:202085‑M1/90‑88 (MQ=255)                                                                                      aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt   >  2:454836‑M1/1‑2 (MQ=255)                                                                                      aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt   >  2:476758‑M1/1‑2 (MQ=255)                                                                                       aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  1:353358‑M1/1‑1 (MQ=255)                                                                                       aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  2:384479‑M1/1‑1 (MQ=255)                                                                                       aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  2:47873‑M1/1‑1 (MQ=255)                                                                                       aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacacggttcatcatgagtcatcaacttaccttc  >  2:436186‑M1/1‑1 (MQ=255)                                                                                       aggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                   <  2:163739‑M1/41‑41 (MQ=255)                                                                                       aggaaggtgcgaacaagtccctgatatgagatcatgtttgt                                                   >  1:163739‑M1/1‑1 (MQ=255)                                                                                       |                                                                                          CTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972665‑1972840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑