| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,287,914 | 0 | T | A | 57.1% | 0.5 / 16.9 | 14 | intergenic (+93/+51) | galU/hns | UTP‑‑glucose‑1‑phosphate uridylyltransferase GalU/DNA‑binding transcriptional regulator H‑NS |
| Reads supporting (aligned to +/- strand): ref base T (6/0); new base A (0/8); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.05e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGTGTTATCCACGAAACGGCG‑TTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTT > NZ_CP009273/1287832‑1287997 | ggTGTTATCCACGAAACGGCG‑TTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAAt > 2:482486/1‑90 (MQ=255) tATCCACGAAACGGCG‑TTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCccgc > 1:240330/1‑90 (MQ=255) tATCCACGAAACGGCG‑TTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCccgc > 1:466733/1‑90 (MQ=255) ccACGAAACGGCG‑TTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGGCAATAAAAAATCCcgccgc > 2:394793/1‑90 (MQ=255) aCGGCGTTTGACAAATCGCCGCCTTTTTTTTATATCTTATTTTTATAAATTTGTTTAAAACCGGGAAAAAAAAAACCCCGCCGCTGGCgg < 1:394793/90‑1 (MQ=255) aCGCCTTTTTTTTATAGTTTATTTTTATAAATTTTTCTAAACCCGGAAAAAAAAAAACCCCGCCGCTGGCGGGATTTTAAGCAAGTGCaa < 1:475298/90‑1 (MQ=255) ttttttATAGTTTTTTTTTATTAAATTTTCTTAAACCGGAAAAAAAAAAACCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACaa < 1:31994/90‑1 (MQ=255) tatttttattAAATTGTTTAAACCCGGAAAAAAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCt < 1:177868/90‑1 (MQ=255) tatttttattAAATTGTCTAAAACCGGAAAAAAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCt < 2:214089/90‑1 (MQ=255) tttattaATTTGTCTAAAACCGAAAAAAAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGAt < 1:482486/89‑1 (MQ=255) ttataaAATTTTTTAAAACCGAAAAAAAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATc < 1:380735/90‑1 (MQ=255) tattaAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCa > 1:248663/1‑90 (MQ=255) aaaaTTGTCTTAAACCGGACAAAAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGa < 2:156606/89‑1 (MQ=255) ggACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGAttt > 2:479993/1‑90 (MQ=255) | GGTGTTATCCACGAAACGGCG‑TTGAGCAATCGACGCCGTTTTTTTATAGCTTATTCTTATTAAATTGTCTTAAACCGGACAATAAAAAATCCCGCCGCTGGCGGGATTTTAAGCAAGTGCAATCTACAAAAGATTATTGCTTGATCAGGAAATCGTCGAGGGATTT > NZ_CP009273/1287832‑1287997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |