| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 57.1% | 9.3 / 12.6 | 14 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| Reads supporting (aligned to +/- strand): ref base A (4/2); new base C (0/8); total (4/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.50e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGCTTCAAAGTTATCAAAACCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATA‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGGAGAGCAT > NZ_CP009273/3571585‑3571744 | ctcctTAAAATTTAAAAAACCCGACGGCGATATCAAGGCATGGCGTCTTGCTGCCCATCAGTCCCCCCACGGGAATC‑CCCGCCACTTCaa < 2:129105/87‑1 (MQ=255) gctTAAAATTTATAAAACCCGACGGCGATATCAAGGCAGGGCGACTTGCTGCCCATCAGTCCCCCCACGGGAATC‑CCCGCCACTTCAatc < 2:83573/90‑1 (MQ=255) gctTAAAATTTAAAAAACCCGCCGGCAATATAAAGGCAGGGCGACTTGCTGTCCATCATTCCCCCCACGGAAATC‑CCCGCCACTTCAatc < 2:91714/90‑1 (MQ=255) cccGGCGGCGATATCAGGGCTGGCCGTTTTGCTGCCCATCACCCCCCCCAGGGGAATC‑CCCGCCACTTCAATCATCTTTAAGGTGCgcgg < 2:344758/89‑1 (MQ=255) aCCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATA‑CCCTCCACTTCAATCATCTTTAAGGTGCgcgg < 2:48562/90‑1 (MQ=255) tGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATA‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAg > 2:249582/1‑90 (MQ=255) aCTTGCTGTCCATCAGTTCCACCACGGGAATA‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCa > 1:330675/1‑90 (MQ=255) ccATCAGTTCCACCACGGGAATA‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGa > 1:294453/1‑90 (MQ=255) catcatTCCCCCCACGGGAATC‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGat < 2:75167/90‑1 (MQ=255) cATCAGTCCCCCCGGGGAAATC‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGat < 1:120120/90‑1 (MQ=255) tCCACCACGGGAATA‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAg > 2:145394/1‑90 (MQ=255) cccccacGGAAATC‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAgg < 2:61538/87‑1 (MQ=255) ccagGGGAAAACCCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGgag < 1:264522/90‑1 (MQ=255) ggaaaTC‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGGAGAGCAt < 2:403761/87‑1 (MQ=255) | CTGCTTCAAAGTTATCAAAACCGACGGCGATATCAAGGCATGGCGACTTGCTGTCCATCAGTTCCACCACGGGAATA‑CCCGCCACTTCAATCATCTTTAAGGTGCGCGGCGTGTGGGTACGTTCGGTGAGGATCAGGCCGTCGATATTCCAGGAGAGCAT > NZ_CP009273/3571585‑3571744 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |