Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1166007	1166131	125	5 [1]	[0] 2	mfd	transcription‑repair coupling factor

GTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGG  >  NZ_CP009273/1165917‑1166013                                                                                          |        gTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCAt         >  1:166706/1‑90 (MQ=255) gTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCAt         >  1:27142/1‑90 (MQ=255) gTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCAt         >  1:52110/1‑90 (MQ=255) gTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGAAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCAt         >  1:242208/1‑90 (MQ=255)        gAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTgg  <  2:52110/90‑1 (MQ=255)                                                                                          |        GTGCAAAGAATTTGTAAATGTTGCAGATGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGG  >  NZ_CP009273/1165917‑1166013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑