Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1339530	1339576	47	3 [0]	[1] 2	pdeR	cyclic di‑GMP phosphodiesterase

GAGTTCCTGGAGAACCTGTTTCAGGGCGGTGAAAATGGTTTGATCGGCGAGCTGACGTGCAGAAATATTTACCGCCACTCGCAGGTTTAT  >  NZ_CP009273/1339440‑1339529                                                                                          | gggTTCCTGGACACCCTGTTTCGGGGGGGTGAAAATGGTTTGACCGGCGGGCTGACGTGCAAAAATATTTACCGCCACTCGCAGGTTTAt  <  2:183399/88‑1 (MQ=255) gatttCCTGGAAAACCTGTTTCAGGGCGGTGAAAATGTTTTGATCGGCGAGCTGACGTGCAGAAATATTTACCGCCACTCGCAGGTTTAt  <  2:208480/87‑1 (MQ=255) gAGTTCCTGGAGAACCTGTTTCAGGGCGGTGAAAATGGTTTGATCGGCGAGCTGACGTGCAGAAATATTTACCGCCACTCGCAGGTTTAt  >  1:211149/1‑90 (MQ=255)                                                                                          | GAGTTCCTGGAGAACCTGTTTCAGGGCGGTGAAAATGGTTTGATCGGCGAGCTGACGTGCAGAAATATTTACCGCCACTCGCAGGTTTAT  >  NZ_CP009273/1339440‑1339529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑