Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1705712	1705745	34	2 [1]	[1] 2	rsxE	electron transport complex subunit RsxE

GACTCCCCTTTCCTGCTGGCGATGCTGCCACCAGGTGCATTTATTGGCCTGGGACTGATGCTGGCAGGAAAATACCTGATTGATGAAAGAATGAAAAAGCGC  >  NZ_CP009273/1705622‑1705723                                                                                          |             gACTCCCCTTTCCTGCTGGCGATGCGGCCACCAGGTGCACTTATTGGCCTGGGACTGGTGCTGGCCGGGAACTACCTGATTGATGAAAGa              >  1:173645/1‑90 (MQ=255)             ctgctgGCGATGCTGCCACCAGGTGCATTTATTGGCCTGGGACTGATGCTGGCAGGAAAATACCTGATTGATGAAAGAATGAAAAAgcgc  <  2:246417/90‑1 (MQ=255)                                                                                          |             GACTCCCCTTTCCTGCTGGCGATGCTGCCACCAGGTGCATTTATTGGCCTGGGACTGATGCTGGCAGGAAAATACCTGATTGATGAAAGAATGAAAAAGCGC  >  NZ_CP009273/1705622‑1705723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑