Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2532020	2532057	38	2 [0]	[1] 2	[cysM]	[cysM]

GATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAT  >  NZ_CP009273/2531971‑2532019                                                 | gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAt  >  1:119587/1‑49 (MQ=40) gATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAt  <  2:119587/49‑1 (MQ=40)                                                 | GATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTCATCAGTCTCCGAT  >  NZ_CP009273/2531971‑2532019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑