Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1595556	1595566	11	2 [0]	[0] 5	lsrR/lsrA	transcriptional regulator LsrR/autoinducer 2 ABC transporter ATP‑binding protein LsrA

TGTGATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGAAAATCAAAATAGCATAAATTGTGATCTATTCGTCGGAA  >  NZ_CP009273/1595567‑1595656 |                                                                                          tgtgATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGa                                        <  1:200116/52‑1 (MQ=255) tgtgATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGa                                        >  2:200116/1‑52 (MQ=255) tgtgATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGAAAATCAAAATAGCATAAATTGTGATCTATTCGTCGGaa  >  2:18109/1‑90 (MQ=255) tgtgATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGAAAATCAAAATAGCATAAATTGTGATCTATTCGTCGGaa  <  2:65277/90‑1 (MQ=255) tgtgATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGAAAATCAAAATAGCATAAATTGTGATCTATTCGTCGGaa  >  2:93931/1‑90 (MQ=255) |                                                                                          TGTGATGGCAACCACAGTTTGACTCTACGAGCATGAACAAACGCAACCGTGAAAATCAAAATAGCATAAATTGTGATCTATTCGTCGGAA  >  NZ_CP009273/1595567‑1595656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑