Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2288646	2288660	15	3 [0]	[0] 2	ccmE	cytochrome c maturation protein CcmE

TCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTG  >  NZ_CP009273/2288661‑2288709 |                                                 tCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTg  >  1:69347/1‑49 (MQ=255) tCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTg  <  2:69347/49‑1 (MQ=255) |                                                 TCACCATCCCGCCAACGCGCAGACGCTGACCGACTTCCGGCATTTGCTG  >  NZ_CP009273/2288661‑2288709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑