Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2540393	2540407	15	2 [1]	[1] 2	murP	PTS N‑acetylmuramic acid transporter subunit IIBC

GCTGATCCCCGGTTTTATTGCCGCCGGTCTGCTGCTGGGGATAGCGACGTTAATTGCCACGGTGATGCACGTTCCGGCAGATGCTCAGGGAACACTAC  >  NZ_CP009273/2540400‑2540497         |                                                                                          gcTGATCCCCGGTTTTATTGCCGCCGGTCTGCTGCTGGGGATAGCGACGTTAATTGCCACGGTGATGCACGTTCCGGCAGATGCTCAggg          >  2:252948/1‑90 (MQ=255)         ccGGTTTTATTGCCGCCGGTCTGCTGCTGGGGATAGCGACGTTAATTGCCACGGTGATGCACGTTCCGACAGATGCTCAGGGAACACTAc  >  2:22349/1‑90 (MQ=255)         |                                                                                          GCTGATCCCCGGTTTTATTGCCGCCGGTCTGCTGCTGGGGATAGCGACGTTAATTGCCACGGTGATGCACGTTCCGGCAGATGCTCAGGGAACACTAC  >  NZ_CP009273/2540400‑2540497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑