Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2669943	2670002	60	2 [1]	[1] 3	yphD	ABC transporter permease

GGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAAT  >  NZ_CP009273/2669999‑2670088     |                                                                                      ggtggCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAAt  <  2:33987/90‑1 (MQ=255)     gcggcATCGCGCAGCACGTTCATCTGGTTATTCAATg                                                   >  1:148080/1‑37 (MQ=255)     gcggcATCGCGCAGCACGTTCATCTGGTTATTCAATg                                                   <  2:148080/37‑1 (MQ=255)     |                                                                                      GGTGGCGGCATCGCGCAGCACGTTCATCTGGTTATTCAATGAGATAAAGCCAGGCGCGTTCAGGGAGAAGACCAGATAAAGAATGGCAAT  >  NZ_CP009273/2669999‑2670088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑