Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3377273	3377284	12	2 [1]	[1] 2	mdh	malate dehydrogenase

TAATACCAATGCACGCTTTCGGGCAGGTTTTCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCA  >  NZ_CP009273/3377279‑3377374       |                                                                                          taataCCAATGCACGCTTTCGGGCAGGTTTTCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAAc        <  2:107992/90‑1 (MQ=255)       cAATGCACGCTTTCGGGCAGGTTTTCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCa  >  2:30771/1‑90 (MQ=255)       |                                                                                          TAATACCAATGCACGCTTTCGGGCAGGTTTTCGCAACTTGCTGTACCAGGTTTTTCACGATGCCGGCGTTAACGTTAAACAGGTCGGAACGATCCA  >  NZ_CP009273/3377279‑3377374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑