mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 49,765 | C→T | intergenic (+134/‑58) | kefC → / → folA | glutathione‑regulated potassium‑efflux system protein KefC/type 3 dihydrofolate reductase |
| MC JC | 2,399,465 | Δ7 bp | coding (650‑656/939 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | 3,754,231 | G→T | R127S (CGC→AGC) | selA ← | L‑seryl‑tRNA(Sec) selenium transferase |
| RA | 4,267,454 | C→T | R20C (CGC→TGC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_CP009273 | 153694 | 153706 | 13 | 2 [1] | [1] 2 | yadN/folK | fimbrial protein/2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine diphosphokinase |
| * | * | ÷ | NZ_CP009273 | 356981 | 357575 | 595 | 6 [0] | [1] 2 | [lacA] | [lacA] |
| * | * | ÷ | NZ_CP009273 | 524090 | 524130 | 41 | 3 [1] | [1] 2 | [BW25113_RS02575]–[BW25113_RS24960] | [BW25113_RS02575],[BW25113_RS24960] |
| * | * | ÷ | NZ_CP009273 | 896106 | 896135 | 30 | 2 [1] | [1] 2 | artJ/artM | ABC transporter substrate‑binding protein ArtJ/arginine ABC transporter permease ArtM |
| * | * | ÷ | NZ_CP009273 | 982718 | 982740 | 23 | 2 [1] | [1] 2 | ompF/asnS | porin OmpF/asparagine‑‑tRNA ligase |
| * | * | ÷ | NZ_CP009273 | 1320814 | 1320860 | 47 | 2 [0] | [1] 2 | yciQ | DUF2207 domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 1397087 | 1397138 | 52 | 2 [1] | [1] 2 | abgB | p‑aminobenzoyl‑glutamate hydrolase subunit AbgB |
| * | * | ÷ | NZ_CP009273 | 1404351 | 1404369 | 19 | 2 [1] | [1] 2 | dbpA | ATP‑dependent RNA helicase DbpA |
| * | * | ÷ | NZ_CP009273 | 1431494 | 1431504 | 11 | 2 [1] | [0] 2 | ompN/nifJ | porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| * | * | ÷ | NZ_CP009273 | 1515113 | 1515135 | 23 | 2 [1] | [1] 3 | mcbR | colanic acid/biofilm transcriptional regulator McbR |
| * | * | ÷ | NZ_CP009273 | 1616649 | 1616658 | 10 | 2 [1] | [0] 2 | ydeE | efflux MFS transporter YdeE |
| * | * | ÷ | NZ_CP009273 | 1911265 | 1911310 | 46 | 3 [1] | [1] 2 | yebS | membrane integrity lipid transport subunit YebS |
| * | * | ÷ | NZ_CP009273 | 2062015 | 2062076 | 62 | 2 [1] | [1] 2 | BW25113_RS10415/BW25113_RS24005 | IS5‑like element IS5 family transposase/TonB‑dependent receptor plug domain‑containing protein |
| * | * | ÷ | NZ_CP009273 | 2118377 | 2118435 | 59 | 2 [1] | [1] 3 | wcaI | colanic acid biosynthesis fucosyltransferase WcaI |
| * | * | ÷ | NZ_CP009273 | 2243098 | 2243127 | 30 | 2 [1] | [1] 4 | yeiE/yeiH | DNA‑binding transcriptional regulator YeiE/YeiH family protein |
| * | * | ÷ | NZ_CP009273 | 2753728 | 2753746 | 19 | 3 [1] | [1] 2 | yfjI | YfjI family protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 32 (1.820) | 23/168 | 0.0 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
| * | ? | NZ_CP009273 | 1203246 = | 7 (0.400) | 11 (0.770) | 10/136 | 0.3 | 67.3% | coding (290/630 nt) | BW25113_RS05990 | hypothetical protein |
| ? | NZ_CP009273 | 1205075 = | 5 (0.350) | coding (40/540 nt) | BW25113_RS06005 | phage tail protein | |||||
| * | ? | NZ_CP009273 | = 1391494 | NA (NA) | 8 (0.460) | 7/166 | 0.8 | 100% | intergenic (+145/‑128) | BW25113_RS06980/ynaJ | IS5‑like element IS5 family transposase/DUF2534 family protein |
| ? | NZ_CP009273 | 1972747 = | 0 (0.000) | intergenic (‑293/‑487) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC | |||||
| * | ? | NZ_CP009273 | = 1972751 | 0 (0.000) | 10 (0.600) | 8/160 | 0.6 | 100% | intergenic (‑297/‑483) | flhD/uspC | flagellar transcriptional regulator FlhD/universal stress protein UspC |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
| * | ? | NZ_CP009273 | 4532499 = | 4 (0.230) | 7 (0.450) | 7/150 | 0.7 | 49.0% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 11 (0.700) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
| * | ? | NZ_CP009273 | = 4532507 | 4 (0.230) | 11 (0.700) | 7/150 | 0.7 | 60.2% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 11 (0.700) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||