mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 36 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,571,661 | 0 | A | C | 73.7% | 2.1 / 10.8 | 19 | G142G (GGT→GGG) | gntR | gluconate operon transcriptional repressor GntR |
| * | NZ_CP009273 | 3,632,157 | 0 | A | T | 62.5% | 8.5 / 15.9 | 16 | I386F (ATC→TTC) | pitA | inorganic phosphate transporter PitA |
| * | NZ_CP009273 | 353,601 | 0 | C | A | 61.5% | ‑5.3 / 11.2 | 13 | L267F (TTG→TTT) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 937,169 | 0 | T | G | 58.3% | 2.4 / 11.2 | 12 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| * | NZ_CP009273 | 1,152,727 | 0 | T | G | 58.3% | 5.9 / 10.1 | 12 | G165G (GGT→GGG) | ycfH | metal‑dependent hydrolase |
| * | NZ_CP009273 | 172,772 | 0 | A | G | 57.9% | 8.1 / 16.4 | 19 | G393G (GGA→GGG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 333,785 | 0 | G | T | 57.9% | 12.3 / 29.9 | 19 | V433L (GTG→TTG) | fdrA | acyl‑CoA synthetase FdrA |
| * | NZ_CP009273 | 172,755 | 0 | A | G | 57.1% | 3.2 / 19.7 | 21 | T388A (ACG→GCG) | clcA | H(+)/Cl(‑) exchange transporter ClcA |
| * | NZ_CP009273 | 3,090,826 | 0 | T | G | 57.1% | 8.3 / 10.7 | 14 | G67G (GGT→GGG) | hemW | radical SAM family heme chaperone HemW |
| * | NZ_CP009273 | 3,175,960 | 0 | G | T | 57.1% | 7.8 / 21.3 | 14 | G18C (GGC→TGC) | zupT | zinc transporter ZupT |
| * | NZ_CP009273 | 3,902,480 | 0 | T | A | 57.1% | 4.9 / 14.1 | 14 | Y107F (TAT→TTT) | pstA | phosphate ABC transporter permease PstA |
| * | NZ_CP009273 | 4,058,951 | 0 | G | C | 56.2% | 13.3 / 18.9 | 16 | A59G (GCG→GGG) | yihO | MFS transporter |
| * | NZ_CP009273 | 1,218,035 | 0 | G | C | 55.6% | 6.3 / 10.5 | 9 | A21G (GCG→GGG) | ymgD | YmgD family protein |
| * | NZ_CP009273 | 4,195,536 | 0 | G | T | 55.6% | 5.0 / 12.2 | 9 | T108T (ACC→ACA) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NZ_CP009273 | 3,734,269 | 0 | T | G | 55.2% | 23.2 / 37.2 | 29 | V402G (GTG→GGG) | avtA | valine‑‑pyruvate transaminase |
| * | NZ_CP009273 | 353,591 | 0 | T | C | 54.5% | 3.9 / 11.2 | 11 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| * | NZ_CP009273 | 4,594,167 | 0 | C | T | 54.5% | 4.7 / 26.4 | 22 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NZ_CP009273 | 4,612,067 | 0 | A | G | 54.5% | 13.8 / 27.9 | 22 | E161G (GAG→GGG) | yjjJ | type II toxin‑antitoxin system HipA family toxin YjjJ |
| * | NZ_CP009273 | 602,068 | 0 | G | A | 53.8% | 4.4 / 13.6 | 13 | Q258* (CAG→TAG) | ybdK | YbdK family carboxylate‑amine ligase |
| * | NZ_CP009273 | 1,523,555 | 0 | A | C | 53.8% | 5.7 / 12.7 | 13 | pseudogene (1397/2037 nt) | BW25113_RS07645 | RHS repeat protein |