New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3629246	0 (0.000)	26 (1.610)	15/168	0.2	100%	coding (1046/1053 nt)	yhiM	DUF2776 domain‑containing protein
	?	NZ_CP009273	3645396 =	NA (NA)					pseudogene (746/747 nt)	BW25113_RS18155	hypothetical protein

CCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATT  >  NZ_CP009273/3629164‑3629334                                                                                   |                                                                                         ccTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggt                                                                                   >  2:444725‑M1/1‑83 (MQ=255)   ttCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgc                                                                                 >  1:372054‑M1/1‑81 (MQ=255)    tCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcg                                                                                >  1:139110‑M1/1‑80 (MQ=255)    tCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcg                                                                                >  2:7411‑M1/1‑80 (MQ=255)    tCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcg                                                                                >  1:385994‑M1/1‑80 (MQ=255)           ttCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagc                                                                         <  2:139110‑M1/90‑18 (MQ=255)                              ggTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggct                                                      >  2:339884‑M1/1‑54 (MQ=255)                              ggTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggct                                                      >  1:131874‑M1/1‑54 (MQ=255)                                             gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca                                       >  2:258836‑M1/1‑39 (MQ=255)                                             gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca                                       >  1:251679‑M1/1‑39 (MQ=255)                                             gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca                                       >  2:369473‑M1/1‑39 (MQ=255)                                             gttCTCAATCGTTTCAATATTAGAAGCGGGTTCCGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca                                       >  1:332649‑M1/1‑39 (MQ=255)                                               tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt                                     <  1:101120‑M1/90‑54 (MQ=255)                                                       gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             >  2:5523‑M1/1‑29 (MQ=255)                                                       gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg                             >  2:221686‑M1/1‑29 (MQ=255)                                                         ttCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt                           >  2:165276‑M1/1‑27 (MQ=255)                                                           cAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttg                         <  1:221686‑M1/90‑66 (MQ=255)                                                                ttAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                    <  2:372054‑M1/90‑71 (MQ=255)                                                                       cGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt             >  2:909‑M1/1‑13 (MQ=255)                                                                        gggTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc            >  1:2874‑M1/1‑12 (MQ=255)                                                                         ggTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttct           >  1:265972‑M1/1‑11 (MQ=255)                                                                         ggTTCTGCTAAggaaggtgcgaataagcggggaaattcttc                                                            >  2:369112‑M1/1‑11 (MQ=255)                                                                         ggTTCTGCTAAggaaggtgcgaataagcggggaaattcttc                                                            <  1:369112‑M1/41‑31 (MQ=255)                                                                         ggTTCTGCTAAggaaggtgcgaataagcggggaaattcttc                                                            <  1:329760‑M1/41‑31 (MQ=255)                                                                                 tAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa   <  1:124711‑M1/90‑88 (MQ=255)                                                                                  aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat  >  1:172118‑M1/1‑2 (MQ=255)                                                                                   |                                                                                         CCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATT  >  NZ_CP009273/3629164‑3629334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.