Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	519379	519388	10	2 [0]	[1] 2	rhsD	rhs element protein RhsD

TACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAG  >  NZ_CP009273/519380‑519478          |                                                                                          tACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACg           >  1:132463/1‑90 (MQ=255)          gAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGAGGGTGCCGGGCGGGCGTTCCGGCGGGGGCTGACCACGCCGGCGCAg  >  2:298060/1‑90 (MQ=21)          |                                                                                          TACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAG  >  NZ_CP009273/519380‑519478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑