New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1972751	0 (0.000)	19 (0.960)	16/166	0.2	100%	intergenic (‑297/‑483)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC
	?	NZ_CP009273	= 2283592	NA (NA)					intergenic (‑68/‑387)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP

TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAC  >  NZ_CP009273/1972669‑1972837                                                                                   |                                                                                       tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggt                                                                                 >  2:276924‑M1/1‑83 (MQ=255)  cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtg                                                                                <  2:444651‑M1/90‑9 (MQ=255)            gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCAt                                                                      <  1:361605‑M2/23‑1 (MQ=255)              aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                    <  1:299328‑M1/90‑21 (MQ=255)                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatg                                                             >  1:525220‑M1/1‑63 (MQ=255)                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaag                                                                        <  2:432492‑M1/79‑17 (MQ=255)                     ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaag                                                                        >  1:432492‑M1/1‑63 (MQ=255)                      gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttttgttt                                                            <  2:134642‑M2/33‑1 (MQ=255)                       aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                           >  1:146222‑M1/1‑61 (MQ=255)                        ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgaga                                                          >  1:408581‑M1/1‑60 (MQ=255)                          ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatc                                                        <  2:146222‑M1/90‑33 (MQ=255)                            atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGgtg                                                      <  2:149398‑M2/39‑1 (MQ=255)                                          ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                        <  2:131999‑M1/90‑49 (MQ=255)                                                    aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtcc                                                                     >  1:152546‑M1/1‑32 (MQ=255)                                                    aTGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtcc                                                                     <  2:152546‑M1/51‑20 (MQ=255)                                                        tttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc                          <  2:519328‑M2/67‑1 (MQ=255)                                                              cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                    >  1:7591‑M1/1‑22 (MQ=255)                                                                caAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                  >  2:37995‑M1/1‑20 (MQ=255)                                                                     cacTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                      >  2:248903‑M1/1‑15 (MQ=255)                                                                     cacTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                      <  1:248903‑M1/65‑51 (MQ=255)                                                                      acTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca            <  1:251023‑M1/90‑77 (MQ=255)                                                                            ttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg      >  1:330239‑M2/4‑90 (MQ=255)                                                                                ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc  >  1:407239‑M1/1‑4 (MQ=255)                                                                                ttAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacc  >  2:581610‑M1/1‑4 (MQ=255)                                                                                   |                                                                                       TCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAC  >  NZ_CP009273/1972669‑1972837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.