| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3629246 | 0 (0.000) | 27 (1.360) | 14/166 | 0.3 | 100% | coding (1046/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645396 = | NA (NA) | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
ATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTA > NZ_CP009273/3629161‑3629335 | aTTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa < 2:156451‑M1/90‑5 (MQ=255) ttCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaag > 2:336538‑M1/1‑85 (MQ=255) tCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcg > 2:185815‑M1/1‑80 (MQ=255) ggAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttct > 1:283437‑M1/1‑59 (MQ=255) cGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggc < 2:418488‑M1/90‑36 (MQ=255) ggTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggct > 2:318831‑M1/1‑54 (MQ=255) tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:568283‑M1/90‑46 (MQ=255) gttgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 1:106343‑M1/90‑49 (MQ=255) ttgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcattt > 1:549751‑M1/1‑41 (MQ=255) gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAgaaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 2:438682‑M1/1‑39 (MQ=255) gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGATAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 1:335195‑M1/1‑39 (MQ=255) tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:192880‑M1/90‑54 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:469640‑M1/1‑29 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:55915‑M1/1‑29 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggc > 1:403367‑M1/1‑29 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggc < 2:403367‑M1/64‑36 (MQ=255) ttCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 2:137996‑M1/90‑82 (MQ=255) gCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgta > 1:376327‑M1/1‑5 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:84836‑M1/1‑2 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 1:19489‑M1/1‑2 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:376327‑M1/90‑89 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:335195‑M1/90‑89 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat > 2:330862‑M1/1‑2 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:264589‑M1/47‑46 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 1:264589‑M1/1‑2 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 2:425861‑M1/1‑1 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 2:554448‑M1/1‑1 (MQ=255) | ATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTA > NZ_CP009273/3629161‑3629335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |