| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 2283591 | NA (NA) | 21 (1.070) | 16/164 | 0.2 | 95.5% | intergenic (‑67/‑388) | BW25113_RS11435/narP | IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP |
| ? | NZ_CP009273 | = 3512441 | 1 (0.050) | intergenic (‑18/+383) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
AACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGA > NZ_CP009273/3512353‑3512530 | aaCTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGg < 1:458738‑M2/90‑2 (MQ=255) cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGAc < 2:305352‑M2/7‑1 (MQ=255) cTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaa > 2:297193‑M2/1‑87 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTc < 2:117641‑M2/12‑1 (MQ=255) aTAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaaca > 1:290243‑M2/1‑77 (MQ=255) tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATg > 2:584930‑M2/72‑90 (MQ=255) gTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagt > 2:339420‑M2/1‑74 (MQ=255) tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCtt < 1:383547‑M2/31‑1 (MQ=255) cATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcat > 1:495574‑M2/1‑57 (MQ=255) cccAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgt > 1:271237‑M2/1‑51 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 2:339911‑M2/49‑1 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga < 2:211047‑M2/90‑48 (MQ=255) gAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:410977‑M2/1‑43 (MQ=255) gATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca > 2:466043‑M2/1‑39 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:48391‑M2/1‑38 (MQ=255) ttGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga < 2:535789‑M2/90‑56 (MQ=255) gCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac > 2:88157‑M2/1‑33 (MQ=255) gaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:187128‑M2/63‑1 (MQ=255) cGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 2:320731‑M2/1‑32 (MQ=255) ttCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 2:159490‑M2/90‑62 (MQ=255) tctcTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt > 1:214942‑M2/1‑28 (MQ=255) cccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCCCCGCAGGACATGAACTGAAACCTCAt > 2:139618‑M2/21‑90 (MQ=255) aTTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg > 2:290980‑M2/1‑20 (MQ=255) cgcaccttccCTAAGACTATTCGTTAATGATAAACCCGC‑TCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCg < 1:544307‑M2/80‑1 (MQ=255) gcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt > 1:42585‑M2/10‑39 (MQ=255) gcaccttccCTAAGACTATTCGTTAATGATAAACCCGCt < 2:42585‑M2/30‑1 (MQ=255) taAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct > 1:37995‑M2/1‑4 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc < 2:366311‑M2/80‑78 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc > 1:366311‑M2/1‑3 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:31853‑M2/1‑2 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat < 2:31853‑M2/54‑53 (MQ=255) ggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca < 2:419445‑M2/59‑59 (MQ=255) ggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 1:419445‑M2/1‑1 (MQ=255) gACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGa < 1:140803/90‑1 (MQ=255) | AACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATAAGATATTGCGAGAGTCAGACTGA > NZ_CP009273/3512353‑3512530 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |