Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 4,213,525 | 0 | C | T | 53.3% | 1.0 / 15.0 | 15 | R11K (AGA→AAA) | iclR | glyoxylate bypass operon transcriptional repressor IclR |
Reads supporting (aligned to +/- strand): ref base C (0/7); new base T (8/0); total (8/7) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.55e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-04 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGT > NZ_CP009273/4213441‑4213604 | tCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCcg > 1:146173/1‑90 (MQ=255) tCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCcg > 2:174071/1‑90 (MQ=255) cGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTTCcgc > 2:239881/1‑90 (MQ=255) aTCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGCGGCAACGGCGGGGTTTTTTCCCCGtttt > 1:571750/1‑89 (MQ=255) tCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTcg < 1:239881/90‑1 (MQ=255) tCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTcg < 1:392890/90‑1 (MQ=255) aTTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTg < 2:202781/90‑1 (MQ=255) aaGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCtt < 2:571750/90‑1 (MQ=255) gTCGCTGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGTTTCGCGGGGATGGGGGGGGCCCTGACAGTCTCTTTTTTTTTTTTCGTggga > 2:522605/1‑88 (MQ=255) tGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGTTTTGCGGGGATGGGGGCGACCCTGACAGTCTCTTTTTTTTGTATCGTGGGAAtcat > 2:256887/1‑90 (MQ=255) tGGTGCGGTGGCAACGGCGGGGTTTTTGCCGCGGTTCGCGGGGATGGGGGGGGCCATGACAGGCTCTTTTTTTTTTTTTGTGGGAAtcat > 1:30582/1‑90 (MQ=255) gCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAAtcattttc < 2:64034/90‑1 (MQ=255) gTGGCAACGGCGGGGTTTTTTCCCCGGTTCGCGGGGATGGGGGGGGCCATGACAGGCTCTTTTTTTTTTTTTGTGGGAAtcatttttttt > 1:394526/1‑86 (MQ=255) ggcggGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGt < 1:562755/90‑1 (MQ=255) ggcggGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGt < 1:64143/90‑1 (MQ=255) | TCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGT > NZ_CP009273/4213441‑4213604 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |