| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3629246 | 0 (0.000) | 25 (1.330) | 18/168 | 0.1 | 100% | coding (1046/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645396 = | NA (NA) | pseudogene (746/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
TTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTA > NZ_CP009273/3629157‑3629335 | ttttATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTaa > 2:324681/1‑90 (MQ=255) aTTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa < 1:244967‑M1/90‑5 (MQ=255) aTTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaa > 1:99188‑M1/1‑86 (MQ=255) tCCTTCGCAAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaagg < 1:396094‑M1/90‑7 (MQ=255) ttCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgc > 1:524510‑M1/1‑81 (MQ=255) ttCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgc > 1:445351‑M1/1‑81 (MQ=255) ttCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagc < 2:418538‑M1/90‑18 (MQ=255) tCTGGTCGGTTTTGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcg > 1:120819‑M1/1‑72 (MQ=255) gggAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttc < 1:467075‑M1/90‑31 (MQ=255) ttACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagt > 2:485805‑M1/1‑46 (MQ=255) tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc > 2:530915‑M1/1‑45 (MQ=255) tACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtc < 2:93213‑M1/90‑46 (MQ=255) gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 1:89344‑M1/1‑39 (MQ=255) ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat < 2:524510‑M1/90‑53 (MQ=255) ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat < 2:445351‑M1/90‑53 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:180622‑M1/1‑29 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:224345‑M1/1‑29 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:258031‑M1/1‑29 (MQ=255) gTTTCAATATTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 2:303896‑M1/1‑29 (MQ=255) atTAGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagcc < 2:523355‑M1/90‑70 (MQ=255) aGAAGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat > 1:16115‑M1/1‑18 (MQ=255) aGCGGGTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt > 1:343951‑M1/1‑15 (MQ=255) gggTTCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc > 1:323305‑M1/1‑12 (MQ=255) tCTGCTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc < 1:224345‑M1/90‑83 (MQ=255) aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 1:409912‑M1/90‑89 (MQ=255) aggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 2:158206‑M1/1‑1 (MQ=255) | TTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGGTATGCTTTACGTTGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTA > NZ_CP009273/3629157‑3629335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |