| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,175,957 | 0 | A | T | 64.3% | ‑1.4 / 10.3 | 14 | I17F (ATT→TTT) | zupT | zinc transporter ZupT |
| Reads supporting (aligned to +/- strand): ref base A (0/5); new base T (9/0); total (9/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.61e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGCCTGAAGGTGAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTCGGCGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGAT > NZ_CP009273/3175876‑3176036 | tGCCTGAAGGTGAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGcgcg < 2:17291/90‑1 (MQ=255) gTTGTCGATGTCAGTCCCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTCGGCGTTCTCGGGCAAAAAcc < 1:191752/90‑1 (MQ=255) gTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCCCGTTTTTTTGGGCGGTTTTCGGCGTTCTCCGGCaaaaaac > 2:508558/1‑88 (MQ=255) ctctCATTCTGACCATACTGGCGGGGGCAGCCCCGTTTTTTTGGGCGTTTTTTCGCCGTCTCGGGCAAAAAACCCCCAAACCCTTTCTgg > 2:540901/1‑90 (MQ=255) tctcATTCTGACCATACTGGCGGGGGGAGGCACCGTTTTTGGCGCGGTTTTCCGCGTTCTCGGGGGAAAACCCTCGAACCCCCTTCTGGc > 2:399975/1‑90 (MQ=255) tctcATTCTGACCATACTGGCGGGGGCAGGCACGTTTTTTGGAGGGTTTCTTGGCGTTTTCGGGGAAAAAACCCCGAAGCGCTTACttgg > 2:423151/1‑87 (MQ=255) tctcATTCTGACCATACTGGCGGGGGCAGCCACGTTTTTTTGCGCGTTTTTCGGCGTTCTCGGGCAAAAAACCCCGAAACGCTTTCTGGc > 2:175887/1‑90 (MQ=255) tGACCATACTGGCGGGGGGAGCCACGTTTTTTTGCGCGTTTTTCGGCGGTCTCGGGCAAAAAACCCCCAACCGCTTTCTGGGGGTTTTGc > 1:196880/1‑90 (MQ=255) gACCATACTGGCGGGGGGAGGCCCGTTTTTTTGGGCGCTTTTCGGCGTTCTCGGGGAAAAAACCCCCAACCGGCTACTCGCGgtttttct > 1:314179/1‑86 (MQ=255) gACCATACTGGCGGGGGCAGCCCCGTTTTTTTGCGCGGTTCTCGGCGTTCTCGGGCAAAAAACCCCCAACCCCTTACTGGCGGTTTTGCt > 2:386359/1‑90 (MQ=255) tACTGGCGGGGGCAGCCACGTTTTTTTGCGCGTTTTTCGGCGTTCTCCGGCAAAAACCCCCGAACCGCTTACTGGCGTTTTTGCTAGGtt > 2:152670/1‑90 (MQ=255) ggggCAGCCACGTTTATTGGCGCGTTTCTCGGCGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTgcggcg < 2:154597/90‑1 (MQ=255) aGCCACGTTTATTGGCGCGTTTCTCGGCGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGAt < 1:400693/90‑1 (MQ=255) aGCCACGTTTATTGGCGCGTTTCTCGGCGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGAt < 1:491288/90‑1 (MQ=255) | TGCCTGAAGGTGAAGATTTATAAGGAGTTGTCGATGTCAGTACCTCTCATTCTGACCATACTGGCGGGGGCAGCCACGTTTATTGGCGCGTTTCTCGGCGTTCTCGGGCAAAAACCCTCGAACCGCTTACTGGCGTTTTCGCTAGGTTTTGCGGCGGGGAT > NZ_CP009273/3175876‑3176036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |