Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3448767	3448779	13	2 [1]	[0] 2	gspA/gspC	type II secretion system protein GspA/type II secretion system protein GspC

CTCACCCAACAAATAGCATAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAATTA  >  NZ_CP009273/3448677‑3448777                                                                                          |            cTCACCCAACAAATAGCATAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTcc             <  2:273406/90‑1 (MQ=255)            aaTAGCATAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAatta  <  1:243802/90‑1 (MQ=255)                                                                                          |            CTCACCCAACAAATAGCATAGACGCCAGGTTTGACGTTTCTCACACAACCAGGAAAGAATAACTTCTCTTCTCGTAGACATAGAACTTCCTGTTTTAATTA  >  NZ_CP009273/3448677‑3448777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑