Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	976627	976703	77	2 [0]	[1] 2	ldtD	L,D‑transpeptidase

CAGGCCGATGAGCCTGAAGTAATCCCTGGCGACAGCCCGG  >  NZ_CP009273/976587‑976626                                        | cAGGCCGATGAGCCTGAAGTAATCCCTGGCGACAGCCCgg  >  1:58192/1‑40 (MQ=255) cAGGCCGATGAGCCTGAAGTAATCCCTGGCGACAGCCCgg  <  2:58192/40‑1 (MQ=255)                                        | CAGGCCGATGAGCCTGAAGTAATCCCTGGCGACAGCCCGG  >  NZ_CP009273/976587‑976626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑