Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1709922	1709926	5	3 [1]	[0] 2	pdxY	pyridoxal kinase

CGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGATCCCAGATAGCCACTTAATACGGCATCACAG  >  NZ_CP009273/1709832‑1709922                                                                                          |  cGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGATCCCAGATAGCCACTTAATACGGCATcaca   <  1:356045/90‑1 (MQ=255) cGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGATCCCAGATAGCCACTTAATACGGCATcaca   <  1:365244/90‑1 (MQ=255)  ggATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGATCCCAGATAGCCACTTAATACGGCATCACAg  <  1:345215/90‑1 (MQ=255)                                                                                          |  CGGATTCGCGGCTTTCACCTGACGGACGATACCGAGGATATGTTCACCCTGCTCCGCCGATCCCAGATAGCCACTTAATACGGCATCACAG  >  NZ_CP009273/1709832‑1709922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑