Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2574617	2574632	16	2 [1]	[1] 2	tkt	transketolase

GCGGCGGTAAGCCAGATATTATTCTGATTGCCACCGGTTCAGAGATGGAAATTACCCTGCAAGCGGCAGAGAAATTAGCAGGAGAAGGTCGCAAT  >  NZ_CP009273/2574628‑2574722      |                                                                                          gcggcgGTAAGCCAGATATTATTCTGATTGCCACCGGTTCAGAGATGGAAATTACCCTGCAAGCGGCAGAGAAATTAGCAGGAGAAGGTc       >  1:175915/1‑90 (MQ=255)      ggTAAGCCAGATATTATTCTGATTGCCACCGGTTCAGAGATGGAAATTACCCTGCAAGCGGCAGAGAAATTAGCAGGAGAAGGTCGCAAt  <  2:175915/90‑1 (MQ=255)      |                                                                                          GCGGCGGTAAGCCAGATATTATTCTGATTGCCACCGGTTCAGAGATGGAAATTACCCTGCAAGCGGCAGAGAAATTAGCAGGAGAAGGTCGCAAT  >  NZ_CP009273/2574628‑2574722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑