Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3848144	3848184	41	2 [1]	[1] 2	emrD	multidrug efflux MFS transporter EmrD

GCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTG  >  NZ_CP009273/3848184‑3848274  |                                                                                          gctgctCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGAGGCTGTTTCCGCTGGCGTCCAGCGGCGCGATGGAGCCGTTCCCCTTccg   >  2:88828/1‑89 (MQ=255)  ctgctCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTg  >  2:271731/1‑90 (MQ=255)  |                                                                                          GCTGCTCGTTCCCGCCGCGCTGTTCTTTTTCGGTGCCGGGATGCTGTTTCCGCTGGCGACCAGCGGCGCGATGGAGCCGTTCCCCTTCCTG  >  NZ_CP009273/3848184‑3848274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑