| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,290,243 | 0 | T | G | 61.5% | 3.2 / 11.2 | 13 | L87F (TTA→TTC) | ccmB | heme exporter protein CcmB |
| Reads supporting (aligned to +/- strand): ref base T (2/3); new base G (8/0); total (10/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.50e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.13e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGA > NZ_CP009273/2290157‑2290323 | gCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAAc > 1:297222/1‑90 (MQ=255) gCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAacaaca > 1:240284/1‑90 (MQ=255) aGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGGAACAAAAT‑AATTGGTCAAGAGTGCCgg > 1:34466/1‑89 (MQ=255) aGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACCGCAACAAAATCAATTTTTTAAAAATGCCg > 2:187598/1‑90 (MQ=255) gACCGGTTACAATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAAACTGCCGt > 1:42514/1‑90 (MQ=255) gTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTc > 1:54937/1‑74 (MQ=255) gTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTc < 2:54937/74‑1 (MQ=255) aGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAAt < 1:193481/59‑1 (MQ=255) aGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAAt > 2:193481/1‑59 (MQ=255) aGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCAc > 1:9166/1‑90 (MQ=255) gTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGGAACGGCAACAACATCAATTGTTCAAGAACGCCGGCCCGCAAAATGTCACg > 2:177657/1‑90 (MQ=255) acaACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGc < 1:187598/90‑1 (MQ=255) gggCAAGGGGAACGGCAACAACATCAATTGTTCAAGACTGCCGGCCTGCAAAACGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGa > 2:267366/1‑90 (MQ=255) | GCTACCAGTGGCGAAAGGATGAGTAACGGCAGACCGGTTACCATCCAGTGCGCCATCACCTTCGCCAGCACAACGGCGGGCAAGGGTAACGGCAACAACATCAATTGTTCAAGACTGCCGTCCTGCAAATCGTCACGGAACAGTCGTTCCAGCGCCAGCAAGGATGA > NZ_CP009273/2290157‑2290323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |