New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1203261	0 (0.000)	14 (1.150)	14/134	0.1	100%	coding (305/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	= 1205058	0 (0.000)					coding (57/540 nt)	BW25113_RS06005	phage tail protein

GAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTA  >  NZ_CP009273/1204972‑1205147                                                                                       |                                                                                          gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                                        >  1:168912‑M2/1‑87 (MQ=255)               aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag                                                                          <  2:269948‑M2/90‑18 (MQ=255)                                        ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg                                                 <  1:98501‑M2/90‑43 (MQ=255)                                                       cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata                                  <  2:38926‑M2/90‑58 (MQ=255)                                                        aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat                                 >  2:98501‑M2/1‑32 (MQ=255)                                                               cGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaa                          <  1:208819‑M2/90‑66 (MQ=255)                                                                    cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                                     >  1:122888‑M2/1‑20 (MQ=255)                                                                    cacCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcac                                                     <  2:122888‑M2/58‑39 (MQ=255)                                                                     acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                               >  1:44632‑M2/1‑19 (MQ=255)                                                                     acCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagag                                                               <  2:44632‑M2/47‑29 (MQ=255)                                                                          cAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgc               >  1:269948‑M2/1‑14 (MQ=255)                                                                             gTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggc            >  2:208819‑M2/1‑11 (MQ=255)                                                                               aaTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctt          >  1:38926‑M2/1‑9 (MQ=255)                                                                                      agccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca   <  2:112523‑M2/90‑89 (MQ=255)                                                                                       gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcag  <  1:9265‑M2/90‑90 (MQ=255)                                                                                       |                                                                                          GAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTA  >  NZ_CP009273/1204972‑1205147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.