| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2282398 = | NA (NA) | 23 (1.530) | 13/166 | 0.2 | 92.0% | pseudogene (3/2532 nt) | yejO | autotransporter YejO |
| ? | NZ_CP009273 | 3512437 = | 2 (0.130) | intergenic (‑14/+387) | aroK/hofQ | shikimate kinase AroK/DNA uptake porin HofQ | |||||
AGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATA > NZ_CP009273/3512349‑3512507 | atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 2:251124‑M2/89‑90 (MQ=255)atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCt > 2:142976‑M2/89‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTa > 2:96504‑M2/88‑90 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:4532‑M2/4‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 2:159859‑M2/4‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:217790‑M2/4‑1 (MQ=255) aCTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGga > 2:102721‑M2/1‑88 (MQ=255) gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTc > 1:185222‑M2/79‑90 (MQ=255) gcCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgc > 2:32339‑M2/1‑82 (MQ=255) cAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaa < 1:259732‑M2/90‑12 (MQ=255) aatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTaa < 1:218819‑M2/17‑1 (MQ=255) aTAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaaca < 1:210518‑M2/90‑14 (MQ=255) gTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagt > 1:350383‑M2/1‑74 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 2:42174‑M2/1‑71 (MQ=255) cTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCCTTCCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccc > 1:188059‑M2/1‑71 (MQ=255) ttttCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctg < 1:87880‑M2/90‑22 (MQ=255) tCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgata > 2:184464‑M2/1‑66 (MQ=255) ccGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatat > 1:107346‑M2/1‑65 (MQ=255) tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCtt < 2:392712‑M2/31‑1 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCa > 2:182120‑M2/54‑90 (MQ=255) cccAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgt > 1:110454‑M2/1‑51 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtca < 2:340586‑M2/90‑42 (MQ=255) cAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGcgcc > 1:238592/1‑90 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcat < 2:332192‑M2/90‑43 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGga < 1:349489‑M2/50‑3 (MQ=255) aaCCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGga > 2:349489‑M2/1‑48 (MQ=255) tgagtcagccgagaagaatttccccgcttattcgcaccttccc > 2:318896‑M2/43‑43 (MQ=255) tgagtcagccgagaagaatttccccgcttattcgcaccttccc < 1:318896‑M2/1‑1 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCa < 1:239176‑M2/49‑1 (MQ=255) ccAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct > 1:89970‑M2/1‑46 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAgg > 1:153394‑M2/40‑90 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACa > 1:221586‑M2/37‑90 (MQ=255) agccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACa < 1:338484‑M2/54‑1 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACAt < 1:379235‑M2/55‑1 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 2:182482‑M2/1‑38 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:37021‑M2/1‑38 (MQ=255) atatTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:103935‑M2/1‑38 (MQ=255) atTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAAc > 2:385942/1‑90 (MQ=255) gaatttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGaa < 2:153394‑M2/63‑1 (MQ=255) gaattcccccgcttattcgccccttccCTAAGACTATTCGTTAATGATACACCCGCTTCGCTCAGAGCGCGCCGCAGGACATGAACTGaa < 1:339182‑M2/63‑1 (MQ=255) atttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc < 1:124208‑M2/65‑1 (MQ=255) attcccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAAc > 1:235424‑M2/26‑90 (MQ=255) ttccccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCt < 1:417468‑M2/67‑1 (MQ=255) tctcTGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt > 2:124275‑M2/1‑28 (MQ=255) ctGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgata > 1:9643‑M2/1‑25 (MQ=255) ctGCCATTTTTTCGGTACTACTAAGgaaggtgcgaacaagtccctgata < 2:9643‑M2/49‑25 (MQ=255) ccgcttattcgcaccttccCTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATa < 2:235424‑M2/71‑1 (MQ=255) tttttCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtc > 1:145855‑M2/1‑18 (MQ=255) tttttCGGTACTACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtc < 2:145855‑M2/58‑41 (MQ=255) | AGCTAACTGGCGCCCAATAGTGCTTTTTCCGGCACCCATAGGCCCAACCAGAAAGATATTGCGTTTCTCTGCCATTTTTTCGGTACTACTAAGACTATTCGTTAATGATAAACCCGCTTCGCTCAGAGAGCGCCGCAGGACATGAACTGAAACCTCATA > NZ_CP009273/3512349‑3512507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |