Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3631131	3631604	474	2 [0]	[0] 2	pitA	inorganic phosphate transporter PitA

GCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATC  >  NZ_CP009273/3631083‑3631130                                                | gCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATc  >  1:153071/1‑48 (MQ=255) gCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATc  <  2:153071/48‑1 (MQ=255)                                                | GCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATC  >  NZ_CP009273/3631083‑3631130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑