Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3629247	3631082	1836	22 [0]	[0] 2	[yhiM]–[pitA]	[yhiM],yhiN,[pitA]

GCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATC  >  NZ_CP009273/3631083‑3631130 |                                                gCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATc  >  1:153071/1‑48 (MQ=255) gCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATc  <  2:153071/48‑1 (MQ=255) |                                                GCCATCAATGGTTTCCATGACACAGCCAACGCCGTGGCAACCGTTATC  >  NZ_CP009273/3631083‑3631130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑