Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,472,570 | 0 | A | G | 54.5% | 5.0 / 10.2 | 11 | R30G (AGA→GGA) | ynbB | phosphatidate cytidylyltransferase |
Reads supporting (aligned to +/- strand): ref base A (1/4); new base G (6/0); total (7/4) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.52e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-02 | |||||||||||
Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGTTACATTACGTATTCGTACCTGGTGGGGCATCGTCATTTGTTTTTCAATGGTGATTTC > NZ_CP009273/1472485‑1472643 | gCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTACGGGGGGaaa > 1:135571/1‑90 (MQ=255) gCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGGTACCGGGGGGaaa > 2:51629/1‑90 (MQ=255) tGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTAACGGGGGGAAAAg > 1:403210/1‑90 (MQ=255) aaaTCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGt < 1:42885/90‑1 (MQ=255) aTCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGa < 1:278248/90‑1 (MQ=255) acTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGTTACATTACg < 2:323295/90‑1 (MQ=255) gttgttAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTTCCGGAGGGAAAAGGGGGGGGGGGTAAATTACGTATTTGttc > 2:255544/1‑88 (MQ=255) tgttAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGGTTACGGGGGGAAAAAGGGGGGGGGGTAAATTATGTATTTGTACCt > 1:72359/1‑90 (MQ=255) gATAAACCGTTTTCTGCTATGGCGGTTACCGGGGAGAAAAGGGGGGGGGGGTACATTAAGTATTTGTAACTGGGGGGGGATCGTCATTTg > 2:172575/1‑90 (MQ=255) ccGTTTTCTGCTATGGCGGTTACCGGGGGGAAAAGGGGGGGGGGGTACATTACGTATTTGTTCCTGGGGGGGGATCGTCCTttttttttt > 2:172145/1‑89 (MQ=255) aTGGCGGTTACCGGAGAGAAAAGGGGGTGAGGTTACATTACGTATTCGTACCTGGTGGGGCATCGTCATTTGTTTTTCAATGGTGATTTc < 1:172145/90‑1 (MQ=255) | GCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGTTACATTACGTATTCGTACCTGGTGGGGCATCGTCATTTGTTTTTCAATGGTGATTTC > NZ_CP009273/1472485‑1472643 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |