Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3632340	3633380	1041	2 [0]	[0] 2	[pitA]–uspB	[pitA],uspB

CGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACT  >  NZ_CP009273/3632287‑3632339                                                     | cggcggCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCact  <  1:274869/53‑1 (MQ=255) cggcggCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCact  >  2:274869/1‑53 (MQ=255)                                                     | CGGCGGCAGTGTCTATCGGCCTGGCGAGTTATACCGGGATGCCGGTTTCCACT  >  NZ_CP009273/3632287‑3632339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑