| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,254,414 | 0 | A | C | 52.0% | 12.0 / 31.9 | 25 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |
| Reads supporting (aligned to +/- strand): ref base A (12/0); new base C (0/13); total (12/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.92e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-04 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTGTCCATCACTTTGTCGTAATCCAGCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCTTACCAATCACCA > NZ_CP009273/3254330‑3254495 | cTGCCCATCTTTTTGTCGTAACCCAGCCCGTCGTCCATCAGCGGTGCTTTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGCCCCCCccg < 1:35521/90‑1 (MQ=255) ctttttGTCGTAACCCACCCCGCCTCCCACCGGCGGTGCTTTTTTCGC‑CCCGACCTAAATCTTCAGCTTCCCCCCCCCCCCGCCGTTAAt < 1:319674/87‑1 (MQ=255) ttGTCGTAATCCAGCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCg > 2:326772/1‑90 (MQ=255) ttGTCGTAATCCAGCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCg > 1:285737/1‑90 (MQ=255) ttGTCGTAATCCAGCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCg > 1:359096/1‑90 (MQ=255) aTCCAGCACGTCGTCCATCAGCGGTGCTGGTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCTCCGTTAATTGCGTATagcag > 2:39139/1‑90 (MQ=255) aGCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGtt > 2:281224/1‑90 (MQ=255) gCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGttt > 2:148792/1‑90 (MQ=255) gtcgtcCACCAGGGGTGCTTTTTTCGC‑CCCGCCCTGAATCTTCAGCTTCTCGCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGc < 2:359096/90‑1 (MQ=255) tcgtcCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGcc > 2:281631/1‑90 (MQ=255) tcgtcCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGGAGAGCAGCGTTTTCGcc > 1:261346/1‑90 (MQ=255) gCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAgcgc > 1:308746/1‑90 (MQ=255) ggTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGt > 2:174647/1‑90 (MQ=255) ggTGCT‑TTTTCGGCCCCGCCCTAAATCTTCAGCTTCCCCCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGt < 1:117237/90‑1 (MQ=255) tttcCGG‑CCCGCCCTAACTTTCCAGCTTCTCGCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCaa < 2:285737/90‑1 (MQ=37) cGG‑CCCGCCTTAAATCTTCAGTTTCTCGCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGaa < 2:90146/90‑1 (MQ=37) cGG‑CCCGACCTAAATCTTCAGCTTTTTGCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGaa < 2:58998/90‑1 (MQ=38) gg‑CCCGCCCTAATTCTTCGGCTCCCCGCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAAc < 1:334945/90‑1 (MQ=255) cGACCTGATTCTTCAGTTTCTCCCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCa < 2:304609/90‑1 (MQ=37) attCTTCAGTTTCTCCCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCtt < 1:291250/88‑1 (MQ=25) aaTCTTCACCTTCCCCCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCtt < 1:204691/90‑1 (MQ=25) tCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCTTACCaa > 1:215839/1‑90 (MQ=255) tccTTCTCCCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCTTACCAATc < 1:269703/88‑1 (MQ=255) cgCTTCTCCCCCCCCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTTCATTTGCTTACCAATc < 1:47177/89‑1 (MQ=255) tctcGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCTTACCAATCACCa > 1:249655/1‑90 (MQ=255) | CTGTCCATCACTTTGTCGTAATCCAGCACGTCGTCCATCAGCGGTGCTGTTTTCGG‑CCCGACCTGAATCTTCAGCTTCTCGTCCACCCCGCCGTTAATTGCGTAGAGCAGCGTTTTCGCCAGGTTAGCGCGTGCACCAAAGAACTGCATTTGCTTACCAATCACCA > NZ_CP009273/3254330‑3254495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |