| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,492,743 | (A)5→4 | coding (594/1698 nt) | ypdA → | two‑component system sensor histidine kinase YpdA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,492,739 | 0 | A | . | 100.0% | 56.0 / NA | 14 | coding (590/1698 nt) | ypdA | two‑component system sensor histidine kinase YpdA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (6/8); total (6/8) | |||||||||||
ATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCA > NZ_CP009273/2492652‑2492819 | atatCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGaaa < 1:405524/90‑1 (MQ=255) atCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGaaaag > 2:303027/1‑89 (MQ=255) gTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGaaaagagg > 2:602453/1‑86 (MQ=255) aaaTCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAgcgc > 2:225729/1‑90 (MQ=255) tCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCt > 2:387229/1‑90 (MQ=255) ccTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTg > 2:162534/1‑90 (MQ=255) ccTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTg > 2:169966/1‑90 (MQ=255) gTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGata > 1:523570/1‑90 (MQ=255) gTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGata < 2:404997/90‑1 (MQ=255) tCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGatat < 1:169966/90‑1 (MQ=255) tGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCg > 1:508926/1‑90 (MQ=255) tATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGcc < 1:162534/90‑1 (MQ=255) cTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACaaa < 1:160491/90‑1 (MQ=255) tgCTTCTGGTGCAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTAcc < 1:225729/90‑1 (MQ=255) cAAAGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGcc < 2:400830/90‑1 (MQ=255) aaaGCGTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCa < 1:387229/90‑1 (MQ=255) gTTGAGGGCG‑AAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCa < 2:508926/90‑1 (MQ=255) | ATATCGTCTCTAAAATCGGCATTCCAATGATCCTCGGTAGCGTCTGTATCGGCTTTATTGTGCTTCTGGTGCAAAGCGTTGAGGGCGAAAAAGAGGCCAGCGCCGCGCGGCAGGCCAAGCTGGCGCTGGATATCGCCAACAAAACGCTACCGCTGTTTCGCCATGTCA > NZ_CP009273/2492652‑2492819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |