| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,384,689 | Δ1 bp | coding (699/1446 nt) | tldD ← | metalloprotease TldD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,384,688 | 0 | C | . | 100.0% | 47.1 / NA | 12 | coding (700/1446 nt) | tldD | metalloprotease TldD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (8/4); total (8/4) | |||||||||||
TCATGCAACAGCACGCCCGGCCAACCTGCGCCAAGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCGCCATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAGGAAGAATTCATAA > NZ_CP009273/3384600‑3384761 | tCATGCAACAGCACGCCCGGCCAACCTGCGCCAAGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAgcgca > 1:180194/1‑89 (MQ=255) aTGCAACAGCACGCCCGGCCAACCTGCGCCAAGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAgcgcata < 2:180194/90‑4 (MQ=255) ggCCAACCTGCGCCAAGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTg > 2:89961/1‑90 (MQ=255) gcCAAGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATcc > 1:584382/1‑90 (MQ=255) aGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCAc < 2:467262/90‑1 (MQ=255) aGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCAc < 2:534463/90‑1 (MQ=255) ggCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGc > 2:296776/1‑90 (MQ=255) gCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCgaga > 1:249689/1‑90 (MQ=255) ccGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATc > 1:434959/1‑90 (MQ=255) gTGCAGCAACGGCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAg > 2:370085/1‑90 (MQ=255) ggCAGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAGGAAGAATTCa > 1:278814/1‑90 (MQ=255) aGAAAGATTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAGGAAGAATTCATaa < 2:218484/90‑1 (MQ=255) aTTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAGGAAGAATTCATaa < 1:150018/84‑1 (MQ=255) aTTGACCAGCG‑CATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAGGAAGAATTCATaa > 2:150018/1‑84 (MQ=255) | TCATGCAACAGCACGCCCGGCCAACCTGCGCCAAGTACTACCGGCATGGTGCCCGCTGGTGCAGCAACGGCAGAAAGATTGACCAGCGCCATACGCACTGCTTCTTTTGCCCATGCATCCGCACGGACTTCGCCGTCGAGATCGGCAAGGAAGAATTCATAA > NZ_CP009273/3384600‑3384761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |