Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578970	579063	94	3 [1]	[1] 2	BW25113_RS26085/appY	tail fiber assembly protein/DNA‑binding transcriptional activator AppY

ACATCATCCTGATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTTTATGATAGGTGCAAGATGGATTATGTTTGCTC  >  NZ_CP009273/579054‑579153           |                                                                                          acaTCATCCCGATTCTGATTGTGTATTTAATTGGTTGGTATTTGACTACTATCAACTTGTTTTAATTTTATTATAGGTCCAAGATGGAtt            <  1:419262/90‑1 (MQ=255)           gATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTTTATGATAGGTGCAAGATGGATTATGTTTGCTc  >  2:157748/1‑90 (MQ=255)           |                                                                                          ACATCATCCTGATTATGATTGTGTATTTAATTGGTTGTTATTTGACTACTATCAACTTGTTTTAATTTTATGATAGGTGCAAGATGGATTATGTTTGCTC  >  NZ_CP009273/579054‑579153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑