Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2776963	2776971	9	3 [0]	[1] 2	BW25113_RS24210/BW25113_RS25705	recombinase family protein/DUF5507 domain‑containing protein

CTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGG  >  NZ_CP009273/2776970‑2777061   |                                                                                          ctctTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAAc    >  2:475424/1‑90 (MQ=255)   ctTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACgg  >  2:414426/1‑90 (MQ=255)   |                                                                                          CTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTCACAACAGGACTATTCTCAACGG  >  NZ_CP009273/2776970‑2777061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑