| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,159,340 | C→T | V64V (GTC→GTT) | yegQ → | tRNA 5‑hydroxyuridine modification protein YegQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,159,340 | 0 | C | T | 100.0% | 25.5 / NA | 8 | V64V (GTC→GTT) | yegQ | tRNA 5‑hydroxyuridine modification protein YegQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (3/5); total (3/5) | |||||||||||
CGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTCGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACCGGTGGTGGAAATGGGGCCGGATGCGCT > NZ_CP009273/2159257‑2159426 | cGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTc < 1:344705/90‑1 (MQ=255)cGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTc < 2:491044/90‑1 (MQ=255) gtgCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTCAAc < 1:59508/90‑1 (MQ=255) aTTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTCAACATTGCACCGCACaa < 2:545591/90‑1 (MQ=255) aCGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTCAACATTGCACCGCACAACGCCAAGc > 2:141745/1‑90 (MQ=255) cGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCg > 2:351243/1‑90 (MQ=255) ggCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTTGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGt < 1:435298/90‑1 (MQ=255) cACGCGCTGGGGAAAAAGTTTTATGTTGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACCggtg > 2:184943/1‑90 (MQ=255) tgttgtGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACCGGTGGTGGAAATGGGGCCGGATGCGCt < 1:351243/90‑1 (MQ=255) tgttgtGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACCGGTGGTGGAAATGGGGCCGGATGCGCt < 1:364628/90‑1 (MQ=255) | CGTGTGCGCAACAACGAATTCAACCACGAAAATCTTCAGCTCGGCATCAATGAAGCCCACGCGCTGGGGAAAAAGTTTTATGTCGTGGTCAACATTGCACCGCACAACGCCAAGCTGAAAACCTTTATCCGTGACCTGAAACCGGTGGTGGAAATGGGGCCGGATGCGCT > NZ_CP009273/2159257‑2159426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |