| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,420,231 | C→G | A13P (GCC→CCC) | hisJ ← | histidine ABC transporter substrate‑binding protein HisJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,420,231 | 0 | C | G | 100.0% | 51.7 / NA | 15 | A13P (GCC→CCC) | hisJ | histidine ABC transporter substrate‑binding protein HisJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (6/9); total (6/9) | |||||||||||
TGATTCAAATGGCGCATAGGTCGGGTCGGTACCGATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGG > NZ_CP009273/2420145‑2420310 | tGATTCAAATGGCGCATAGGTCGGGTCGGTACCGATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAg < 2:510613/90‑1 (MQ=255) cgggtcggTACCGATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAg > 1:443119/1‑69 (MQ=255) cgggtcggTACCGATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAg < 2:443119/69‑1 (MQ=255) cggTACCGATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGtt > 1:183218/1‑90 (MQ=255) gATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCAt > 1:335367/1‑90 (MQ=255) gATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCAt > 2:478719/1‑90 (MQ=255) tGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATaa < 1:279267/90‑1 (MQ=255) ggATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGt > 2:390726/1‑90 (MQ=255) gAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACa < 1:390726/90‑1 (MQ=255) gAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACa < 2:302014/90‑1 (MQ=255) gAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACa < 2:6984/90‑1 (MQ=255) aTCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGt < 2:510598/90‑1 (MQ=255) aaCGCCGCAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTtata < 1:478719/90‑1 (MQ=255) cgcAGTTGCGCTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGaa > 2:30723/1‑90 (MQ=255) cTGGAGAAGGGCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAgg < 2:53168/90‑1 (MQ=255) | TGATTCAAATGGCGCATAGGTCGGGTCGGTACCGATGCGGATGTTTTGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGG > NZ_CP009273/2420145‑2420310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |