| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,347,494 | C→T | intergenic (‑85/‑590) | yhcC ← / → gltB | TIGR01212 family radical SAM protein/glutamate synthase large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,347,494 | 0 | C | T | 100.0% | 62.4 / NA | 17 | intergenic (‑85/‑590) | yhcC/gltB | TIGR01212 family radical SAM protein/glutamate synthase large subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (9/8); total (9/8) | |||||||||||
TGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTG > NZ_CP009273/3347414‑3347573 | tGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGc > 2:502273/1‑85 (MQ=255)tGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGc < 1:502273/85‑1 (MQ=255)tGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTa > 1:200454/1‑90 (MQ=255) ccGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAAc > 1:44501/1‑88 (MQ=255) ccGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAAc < 2:44501/88‑1 (MQ=255) ccGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTg > 1:121690/1‑90 (MQ=255) cgcgCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTGc > 1:305757/1‑90 (MQ=255) gcgcCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTGCa > 1:457919/1‑90 (MQ=255) aGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGa < 1:227407/90‑1 (MQ=255) tGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAAtt < 1:453668/90‑1 (MQ=255) ttttAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGc < 2:230180/90‑1 (MQ=255) aCCTGGATCAATCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACtttt < 2:517425/90‑1 (MQ=255) tGGATCAATCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAACTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCt < 1:416692/90‑1 (MQ=255) cAATCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCt < 1:491666/90‑1 (MQ=255) aaTCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCtt > 2:215400/1‑90 (MQ=255) aaTCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCtt > 1:551486/1‑90 (MQ=255) aTCGTCCCGGTCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTtg > 1:133299/1‑90 (MQ=255) | TGATAGACCGCGCCTTGAAAAGAGGCCAAAGCCTGCCATTTTTAGCTCAATTCGGCGATGACCTGGATCAATCGTCCCGGCCTGCTTTTATCAACTGCATAATCAATCAAAATTACCGAAATTTCATGCATAATCACATAAATCACTTTTGCTTATCTTG > NZ_CP009273/3347414‑3347573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |