| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 715,942 | A→C | intergenic (‑26/+232) | speF ← / ← BW25113_RS26090 | ornithine decarboxylase SpeF/leader peptide SpeFL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 715,942 | 0 | A | C | 100.0% | 62.7 / NA | 18 | intergenic (‑26/+232) | speF/BW25113_RS26090 | ornithine decarboxylase SpeF/leader peptide SpeFL |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (9/9); total (9/9) | |||||||||||
CTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTG > NZ_CP009273/715856‑716027 | ctcGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCa < 1:71445/90‑1 (MQ=255) tGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTcc < 1:92842/90‑1 (MQ=255) gCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCa < 1:594952/84‑1 (MQ=255) gCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCa > 2:594952/1‑84 (MQ=255) gTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCa > 1:262506/1‑90 (MQ=255) gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAAt > 2:170834/1‑90 (MQ=255) gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAAt > 2:580095/1‑90 (MQ=255) gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAAt > 2:485912/1‑90 (MQ=255) gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAAt > 2:384562/1‑90 (MQ=255) gTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAAt > 2:430350/1‑90 (MQ=255) gAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAATGAGAAatcga > 2:478914/1‑90 (MQ=255) tAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCaaa < 1:478914/90‑1 (MQ=255) tttCATCTCTTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGa < 2:611608/90‑1 (MQ=255) ctTTATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGAtaaataaa < 1:612970/90‑1 (MQ=255) ttATTTTAGGTAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATc > 2:441397/1‑90 (MQ=255) ttttAGGTAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAgg < 2:365302/90‑1 (MQ=255) ggTAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGAt < 2:427391/90‑1 (MQ=255) tAATCGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTg < 2:375588/90‑1 (MQ=255) | CTCGCTGCGTGGTAAAACAGTCCGGGCAAGAATCACTAACCGCAATTTTTAATTTTGACATTTTTCATCTCTTTATTTTAGGTAATAGCAGGTCCTCAATTTCTCGAATGAGAAATCGATCGTGCCGGAAAAAAGCAAAGTTACCCCGCTGATAAATAAATCAGGTAGATTG > NZ_CP009273/715856‑716027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |